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(June 23 – 26, 2007, Weihai , Shandong , China )
June 2３, 2007 ( Saturday) 8:00am – 8:00pm: on-site registration (location: Shandong University Weihai Academic Hotel) 6:30pm: dinner reception for invited speakers (location: Shandong University Weihai Academic Hotel)
June 24, 2007 (Sunday): Invited talks 8:00am – 8:10am: Welcome Tao Zhan , President of Shandong University and Conference Co-Chair 8:10am – 8:20am: Opening remarks Ying Xu , University of Georgia and Conference Co-Chair
Morning session I: Chair: Liping Wei, Peking University 8:30am – 9:10am: Origins of New Gens: Biological Concepts and Mechanisms in Computation Manyuan Long, University of Chicago 9:20am – 10:00am: Identification of amyloid fibril-forming segments based on structure and residue-based statistical potential Luhua Lai , Peking Universiuty 10:00am – 10:30am: Break and picture taking for the whole group
Morning session II: Chair: Dong Xu , University of Missouri 10:30am – 11:10am: Decomposition of protein sequences and uniqueness of reconstruction from the constituent K-peptides Bailin Hao , Fudan University and CAS, 11:10am – 11:50am: Inferring functional linkages between proteins from evolutionary scenarios Zhirong Sun , Tsinghua University 12:00pm – 13:30pm: Lunch break
Afternoon session I: Chair : Zhirong Sun, Tsinghua University 13:30pm – 14:10pm: A Model of Codon Usage Bias Chao Tang , University of California at San Francisco 14:10pm – 14:50pm: Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families Yixue Li , Shanghai Institute of Bioinformatics 14:50pm – 15:30pm: Combinatorial regulation of transcription factors in genetic networks Wei Wang , University of California at San Diego 15:30pm – 15:50pm: Tea Break
Afternoon session II: Chair : Yixue Li, Shanghai Institute of Bioinformatics 15:50pm – 16:30pm: Computational analysis of ChIP-chip on genome tiling arrays to study human cistromes Xiaole Shirley Liu , Harvard University 16:30pm – 17:10pm: Yeast Transcription Networks: From Structure to Dynamics and Evolution Hao Li, the Department of Biochemistry and Biophysics at UC San Francisco 17:10pm – 17:50pm: The unexpectedly large effect of evolutionary 'transients' on genes and polymorphisms Jun Wang , Beijing Genomics Institute 19:00pm -- : Dinner
June 25, 2007 (Monday): Invited talks Morning session I: Chair: Runsheng Chen, CAS/Institute of Biophysics 8:00am – 8:40am: A New Framework of Applying Compatible Structural Fragments for Protein Structure Prediction Dong Xu , University of Missouri 8:40am – 9:20am: Identification of transcription networks in embryonic stem cells Sheng Zhong , UIUC 9:20am – 10:00am: Systematics of Genomes: Beyond Phylogeny Jun Yu , Beijing Genomics Institute 10:00am – 10:20am: Tea Break
Morning session II: Chair: Xiaole Shirley Liu, Harvard University 10:20am – 11:00am: Prediction of the replication origins in archaeal and bacterial genomes using the Z-curve method Chunting Zhang , Tianjing University 11:00am – 11:40am: Energy from Protein Phosphorylations- Dephosphorylation and Its Biological Functions Hong Qian , University of Washington 12:00pm – 13:30pm: Lunch break
Afternoon session I: Chair: Chao Tang, University of California at San Francisco 13:30pm – 14:10pm: Conserved distances between vertebrate highly conserved elements Runsheng Chen , CAS/Biophysics Institute 14:10pm – 14:50pm: New Structural and Sequence Attributes to Predict Possible Disease-Association of Single Amino Acid Polymorphism (SAP) Liping Wei , Peking University 14:50pm – 15:30pm: Functions, Networks, and Phenotypes by Integrative Genomics Analysis Xianghong Zhou , University of Southern California 15:30pm – 15:50pm: Break
Afternoon session II: Chair : Guojun Li, Shandong University and University of Georgia 15:50pm – 16:30pm: Systems biology: an introduction Ying Xu , University of Georgia 16:30pm – 17:10pm: Evolution of PPI domains and its impacts on organism and network complexity Jingdong Han , CAS/Institute of Genetics 17:10pm – 17:50pm: Fine-mapping for Introgression Line from Dongxiang Common Wild Rice(O.rufipogon Griff) Zhen Su , China Agricultural University 19:00pm -- : Dinner
June 26, 2007 (Tuesday): Contributed talks Morning session I: Chair: Jichang Wu , Shandong University 8:00am – 8:20am: Variable Selection Via Mixed Penalization for High Dimensional Data Analysis with Application to Microarrays Xiaoming Wang, Shanghai University of Finance and Economics 8:20am – 8:40am: A Novel Strategy for Detecting Multiple Loci in Genome- Wide Association Studies of Complex Diseases Jing Li, Case Western Reserve University 8:40am – 9:00am: Sorting by Transpositions: Dealing with Length-Weighted Models Xingqin Qi, Shandong University at Weihai 9:00am – 9:20am: A novel phylogenomic method and its application to coronavirus phylogeny Zhihua Liu, Southeast University 9:20am – 9:40am: Modeling of the regulatory network of mitochondrial apoptosis Pingping Shen, Nanjing University 9:40am – 10:00am: Tea Break
Morning session II: Chair: Fasheng Hu , Shandong University 10:00am – 10:20am: Predicting Contact Map Using Radial Basis Function Neural Network with Conformational Energy Function Deshuang Huang, Chinese Academy of Sciences 10:20am – 10:40am: An effective algorithm of motif finding problem Yong Chen, ShanDong University 10:40am – 11:00am: A Graphical Criterion of Planarity for RNA Secondary Structures with Pseudoknots in Rivas-Eddy Class Shile Gao, Dalian University of Technology 11:00am – 11:20am: DNA Solution Based on Sequence Alignment to the Minimum Spanning Tree Problem Aili Han, Shandong University at Weihai 11:20am – 11:40am, Predicting the Protein Family of Methyl Parathion Hydrolase Jian Tian, Chinese Academy of Agricultural Sciences
11:40 – 11:50am: Concluding remarks Liping Wei : Peking University and IBW Steering Committee Co-Chair Meeting Adjourn
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